# biomcp-server

Source: https://glimind.com/server/pypi%2Fbiomcp-server
Registry id: `pypi/biomcp-server`
Status: unknown

## Install

```json
{
  "mcpServers": {
    "biomcp-server": {
      "command": "uvx",
      "args": [
        "biomcp-server"
      ]
    }
  }
}
```

Claude Code:

```sh
claude mcp add biomcp-server -- uvx biomcp-server
```

## Tools (23)

- `alphafold_structure`: AI 预测结构（pLDDT 置信度）/ AI-predicted structures
- `blast_search`: DNA/蛋白同源 BLAST，返回 top hits / homology search
- `emdb_structure_lookup`: 冷冻电镜结构（标题/作者/分辨率/组分）/ cryo-EM structures
- `europepmc_search`: 全文文献检索（含 OA 全文）/ full-text + open-access
- `gene_enrichment`: GO/KEGG/Reactome 富集分析 / enrichment analysis
- `geo_dataset_search`: 基因表达数据集检索 / expression dataset search
- `get_analysis_template`: 获取分析场景模板 / Get analysis scenario templates
- `hgnc_gene_symbol`: 标准基因符号与别名查询 / canonical symbol & aliases
- `hgnc_search`: 基因符号/别名搜索 / gene symbol search
- `intelligent_analyze`: 智能数据分析和工具推荐 / Intelligent data analysis and tool recommendation
- `kegg_pathway_genes`: 通路包含的基因列表 / genes in a pathway
- `kegg_pathway_search`: KEGG 通路搜索 / pathway search
- `ncbi_fetch_sequence`: 下载核酸/蛋白序列（FASTA/GenBank）/ fetch sequences
- `openalex_work_search`: 全球学术著作检索（被引/作者/期刊）/ scholarly works search
- `pdb_structure_summary`: 实验结构查询（分辨率/方法/链序列）/ experimental structures
- `protein_domains`: 蛋白结构域/家族/位点 / structural domains
- `pubmed_search`: PubMed 文献检索（标题/作者/期刊/PMID/DOI）/ literature search
- `reactome_pathway_search`: 生物通路检索（信号转导/代谢/DNA修复）/ pathway search
- `string_interactions`: 蛋白互作网络查询 / protein interaction network
- `taxonomy_lookup`: 物种分类查询（学名/谱系）/ species taxonomy
- `uniparc_by_id`: UniParc 记录详情（序列/全部交叉引用）/ record by UPI ID
- `uniparc_search`: 蛋白序列归档检索（UPI/交叉引用）/ protein archive search
- `uniprot_annotate`: 蛋白注释（名称/基因/功能/GO）/ protein annotations

Measured by Glimind (https://glimind.com): MCP handshake + tool list only, no tool is ever called. CC BY 4.0.