Is the Cyanheads Protein MCP server down?

mcp-registry/io.github.cyanheads/protein-mcp-server · v0.8.7

healthy
Last checked 2026-10-19 15:30 UTC · handshake 97ms

As of 2026-10-19 15:30 UTC, the Cyanheads Protein MCP server is up with a Glimind reliability score of 81/100 (grade B). Over the last 30 days it answered 99.7% of Glimind's liveness checks. It had 32 outages in 90 days, with a median recovery of 4 minutes.

uptime (30d checks)
99.7%
checks observed
3,873
outages (90d)
32
tools
7

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

Install Cyanheads Protein MCP server

Add to Cursor Add to VS Code

Claude Code

claude mcp add --transport http cyanheads-protein-mcp-server https://protein.caseyjhand.com/mcp

Claude Desktop · Windsurf · Cline (mcpServers JSON)

{
  "mcpServers": {
    "cyanheads-protein-mcp-server": {
      "type": "http",
      "url": "https://protein.caseyjhand.com/mcp"
    }
  }
}

Third-party server, listed as discovered. Review its source before installing.

Agent-readiness: A (98/100)

A (98/100): 0 error(s), 0 warning(s) across 7 tool(s); ~4,566 tokens of tool definitions.
Scores higher than 92% of 15,349 MCP servers Glimind has audited.
Its tool list costs an agent ~4,566 tokens per session — more than 60% of servers.
98 → 98 since 2026-10-17
no tool-poisoning patterns
Schemas100
Descriptions100
Safety hints100
Token cost100
Client compatibility100
Protocol100
Reliability100
Stability64

What to fix (1)

In the last 30 days: 0 tool(s) removed and 9 schema change(s).

Add new tools or optional parameters instead of renaming or removing; deprecate first (say so in the description) and remove later. Agents cache tool contracts. How to fix →

Get alerted

Get an email or webhook when this server's readiness drops by 10+ points, tool-poisoning text appears, or a tool breaks:

curl -X POST https://glimind.com/v1/subscriptions -H 'content-type: application/json' -d '{"tools":["mcp-registry/io.github.cyanheads/protein-mcp-server"],"email":"[email protected]"}'

Agents: watch_tool({"toolId": "mcp-registry/io.github.cyanheads/protein-mcp-server"}) over MCP.

Passed

Largest tool definitions

Static checks of the advertised tools/list (schema, descriptions, annotations, tool-poisoning patterns, names, size) plus observed protocol, uptime, latency and contract changes. Read-only: no tool is ever called. Weights: schema 15, docs 20, safety 15, efficiency 15, compatibility 15, protocol 5, reliability 10, stability 5. Token counts are estimates (~3.6 characters per token).

Operator? Fix these, then re-check live. Embed the readiness badge:

Markdown 
[![MCP agent-readiness](https://glimind.com/v1/readiness/badge/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server.svg)](https://glimind.com/server/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server?ref=badge)
HTML 
<a href="https://glimind.com/server/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server?ref=badge"><img src="https://glimind.com/v1/readiness/badge/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server.svg" alt="MCP agent-readiness"></a>
reStructuredText 
.. image:: https://glimind.com/v1/readiness/badge/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server.svg
   :target: https://glimind.com/server/mcp-registry%2Fio.github.cyanheads%2Fprotein-mcp-server?ref=badge
   :alt: MCP agent-readiness

Tool-definition log

Glimind records every version of this server's tool definitions in a signed, append-only transparency log. Current manifest sha256:62619a8c7a463921…, first seen 2026-10-17, included at leaf 10737 of 27,452. Version history · verify what your client received.

Tools (7)

Compare: most reliable data servers · most reliable ml servers

Know before your agent calls it

Glimind tells agents whether a server is up right now and how to call it, then fails over to a live alternative when it isn't.

Add Glimind — free, no signup:

Add to Cursor Add to VS Code

Claude Code

claude mcp add --transport http glimind https://glimind.com/mcp

Claude Desktop · Windsurf · Cline (mcpServers JSON)

{
  "mcpServers": {
    "glimind": {
      "type": "http",
      "url": "https://glimind.com/mcp"
    }
  }
}

FAQ

Is the Cyanheads Protein MCP server down right now?

As of 2026-10-19 15:30 UTC, the Cyanheads Protein MCP server is up with a Glimind reliability score of 81/100 (grade B). Over the last 30 days it answered 99.7% of Glimind's liveness checks. It had 32 outages in 90 days, with a median recovery of 4 minutes.

How many tools does Cyanheads Protein MCP server provide?

Cyanheads Protein MCP server advertises 7 tools, including protein_analyze_collection, protein_compare_structures, protein_find_similar, protein_get_annotations, protein_get_structure.

How do I install Cyanheads Protein MCP server?

Point your MCP client at this streamable-http endpoint: https://protein.caseyjhand.com/mcp

Is the Cyanheads Protein MCP server safe to connect to an AI agent?

Glimind scanned all 7 tool definitions for tool-poisoning patterns — hidden or invisible characters, instructions that override the model, concealment from the user, requests to read credential or MCP config files, conversation exfiltration and cross-tool shadowing — and found none. This checks what the server tells the model, not what its code does; review the source before granting access to sensitive data.

Operator of Cyanheads Protein MCP server?

Status page: 90-day uptime, every outage and how long it lasted.

Claim this listing to get the Verified operator marker, a remediation checklist and owner analytics, or embed the live badge from any of the tool pages above. Maintainers: alerts, deploy attestation and monthly reports.

Status is an automated estimate from Glimind's liveness checks (handshake and tool listing only; no tool is ever called) and may lag or differ from your network. Glimind is not affiliated with this server or its operator. Operator? Request a correction or opt out at https://glimind.com/opt-out.

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