all tools / bioinformatics
As of the latest check, Glimind tracks 20 bioinformatics AI agent (MCP) tools, of which 1 are healthy right now. The table below ranks them live-first by real-time reliability.
| tool | status | what it does | |
|---|---|---|---|
| string_enrichment org.string-db/string-mcp | healthy | This tool retrieves functional enrichment for a set of proteins using STRING. - If queried with a single protein, the tool expands the quer | alternatives |
| parse_genbank com.seqbench/workbench | unknown | Parse a GenBank flat file into its locus, definition, features and sequence. | alternatives |
| reverse_translate com.seqbench/workbench | unknown | Back-translate a protein to DNA (most-frequent codon per organism, or degenerate IUPAC consensus). | alternatives |
| protein_properties com.seqbench/workbench | unknown | Protein properties: molecular weight, isoelectric point, GRAVY, extinction coefficient and composition. | alternatives |
| protease_digestion com.seqbench/workbench | unknown | In-silico protease/chemical digestion: cleave a protein and report each peptide's position, length and neutral mass. CNBr masses assume term | alternatives |
| variant_comparator com.seqbench/workbench | unknown | Align a query to a reference and call variants (substitutions, insertions, deletions) in HGVS g. notation, with optional coding effects. | alternatives |
| crispr_grna_design com.seqbench/workbench | unknown | Find and score candidate guide RNAs (protospacer + PAM) in a target DNA for common nucleases (SpCas9, SpCas9-NG, SaCas9, Cas12a). PREDICTED, | alternatives |
| sequence_format_convert com.seqbench/workbench | unknown | Convert between FASTA and GenBank (whole sequence, CDS or protein), or export to TSV. | alternatives |
| cross_dimer com.seqbench/workbench | unknown | Screen two oligos for the most stable heterodimer (cross-dimer) between them. | alternatives |
| random_sequence com.seqbench/workbench | unknown | Generate a random DNA, RNA or protein sequence, optionally with a target GC content. | alternatives |
| matchSequences ebi-pf-team/interpro-mcp | unknown | Precomputed matches for one or more protein sequences (MD5s computed automatically) or MD5s — up to 100, one per line. | alternatives |
| run_multiqc @skillmds/core | unknown | Aggregate multiple FastQC reports into a single MultiQC report. Useful for comparing multiple samples. | alternatives |
| run_progressive_mauve_tool mauve-mcp-server | unknown | Run progressiveMauve alignment on input FASTA files with memory/timeout monitoring | alternatives |
| analyze_locus io.github.musharna/plant-genomics-mcp | unknown | Analyze a plant locus across Ensembl, UniProt, Europe PMC, and QuickGO | alternatives |
| find_homologs io.github.musharna/plant-genomics-mcp | unknown | Find homologs by BLAST search and resolve UniProt accessions | alternatives |
| biological_context io.github.musharna/plant-genomics-mcp | unknown | Get biological context via Gramene, KEGG, UniProt, STRING, ATTED-II | alternatives |
| getSequenceAnalysis ebi-pf-team/interpro-mcp | unknown | Retrieve a previously submitted analyzeSequence job by id: the result if finished, else its status. | alternatives |
| plr_generate_analysis_pipeline di-omics/plr-mcp | unknown | Generate a tool-agnostic, UMI-aware single-cell RNA-seq workflow with runtime-configured hooks. | alternatives |
| analyzeSequence ebi-pf-team/interpro-mcp | unknown | Runs InterProScan on a sequence (works for novel sequences, unlike the Matches API lookup). Submits a job and waits briefly; returns the ful | alternatives |
| run_fastqc @skillmds/core | unknown | Run FastQC quality control analysis on FASTQ files. Returns summary of quality metrics and path to HTML report. | alternatives |
As of the latest check, Glimind tracks 20 bioinformatics AI agent (MCP) tools, of which 1 are healthy right now. The table below ranks them live-first by real-time reliability. Glimind rates each neutrally (0–100) from safe liveness probes plus privacy-clean real-usage outcomes — see each tool's live page for its current score and a working alternative if it's down.
Ranked live-first by current verdict (healthy → degraded → down), then by the neutral reliability score. Glimind sells no tools, so the ranking is unconflicted.
Every tool here links to its live alternatives — capability-matched substitutes that are healthy now. Or query https://glimind.com/v1/alternatives/{toolId}.
Live data via MCP/REST. Neutral ratings — Glimind only measures.